Synthetic shRNAs as potent RNAi triggers.

TitleSynthetic shRNAs as potent RNAi triggers.
Publication TypeJournal Article
Year of Publication2005
AuthorsSiolas D, Lerner C, Burchard J, Ge W, Linsley PS, Paddison PJ, Hannon GJ, Cleary MA
JournalNat Biotechnol
Volume23
Issue2
Pagination227-31
Date Published2005 Feb
ISSN1087-0156
KeywordsGene Expression Regulation, Gene Silencing, Gene Targeting, Genetic Engineering, RNA, Small Interfering, Transfection
Abstract

Designing potent silencing triggers is key to the successful application of RNA interference (RNAi) in mammals. Recent studies suggest that the assembly of RNAi effector complexes is coupled to Dicer cleavage. Here we examine whether transfection of optimized Dicer substrates results in an improved RNAi response. Dicer cleavage of chemically synthesized short hairpin RNAs (shRNAs) with 29-base-pair stems and 2-nucleotide 3' overhangs produced predictable homogeneous small RNAs comprising the 22 bases at the 3' end of the stem. Consequently, direct comparisons of synthetic small interfering RNAs and shRNAs that yield the same small RNA became possible. We found synthetic 29-mer shRNAs to be more potent inducers of RNAi than small interfering RNAs. Maximal inhibition of target genes was achieved at lower concentrations and silencing at 24 h was often greater. These studies provide the basis for an improved approach to triggering experimental silencing via the RNAi pathway.

DOI10.1038/nbt1052
Alternate JournalNat Biotechnol
PubMed ID15619616
Grant ListT32 GM008444 / GM / NIGMS NIH HHS / United States